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#!/bin/bash
## Functions to setup BDAP user account for bash & git (only if pending).
#
# Call this script with the name of the action-function as arg[1].
mydir=$(realpath "${0%/*}")
cd "$mydir"
conda_env_prefix="$mydir/env"
conda_env_prefix_rel="./env"
ipython_startup_ustore_vars="$HOME/.ipython/profile_default/startup/50-ustor-vars.py"
function _mute {
"${@}" &> /dev/null
function _log {
printf "%28s: " "${FUNCNAME[1]}"
echo "${@}"
}
function upd20_inputrc {
if _mute grep -v ':history-search-forward' ~/.inputrc; then
_log "already ok"
_log -n "updating..."
cat >> ~/.inputrc <<- "EOF"
$include /etc/inputrc
## arrow up
"\e[A":history-search-backward
## arrow down
"\e[B":history-search-forward
"\C-x\C-r": re-read-init-file
EOF
echo "UPDATED"
fi
}
function upd20_bashrc_git_completions {
if _mute grep "/usr/share/bash-completion/completions/git" ~/.bashrc ; then
_log "already ok"
_log -n "updating..."
cat >> ~/.bashrc <<- "EOF"
## Enable git completions
source /usr/share/bash-completion/completions/git
EOF
echo "UPDATED"
fi
}
function upd20_bashrc_history {
if _mute grep "PROMPT_COMMAND=\"history -a\"" ~/.bashrc ; then
_log "already ok"
_log -n "updating..."
cat >> ~/.bashrc <<- "EOF"
####
## HISTORY CONTROL:
## (more options may lie above))
##
## Save all lines of a multiple-line command in the same history entry.
shopt -s cmdhist
## Save multi-line commands to the history with embedded newlines.
shopt -s lithist
## Save each and EVERY cmd to history
# (not to loose it if terminal closed abruptly!)
PROMPT_COMMAND="history -a"
## Don't put duplicate lines or lines starting with space in the history.
## Ignore 1-char cmds
HISTIGNORE=?:?
EOF
echo "UPDATED"
fi
}
function upd20_bashrc_ustore_vars {
if _mute grep "export USTORE=" ~/.bashrc; then
_log "already ok"
_log -n "updating..."
cat >> ~/.bashrc <<- EOF
## BDAP Storage locations
export PSTORE="/eos/jeodpp/data/projects/LEGENT"
export USTORE="/eos/jeodpp/home/users/${USER}"
export UTRANS="/eos/jeodpp/home/users/${USER}/transfer"
export PTRANS="/eos/jeodpp/data/projects/LEGENT/transfer"
EOF
echo "UPDATED"
fi
}
function upd20_bash_aliases {
if _mute grep 'alias lg=' ~/.bash_aliases; then
_log "already ok"
_log -n "updating..."
cat >> ~/.bash_aliases <<- "EOF"
## GIT ALIASES
alias lg='git lg'
alias lgg='git lgg'
alias log='git log'
alias status='git status'
alias show='git show'
alias log='git log'
alias rb='git rebase'
alias rbi='git rebase -i'
alias rba='git rebase --abort'
alias rbc='git rebase --continue'
alias chrp='git cherry-pick'
alias chrpa='git cherry-pick --abort'
alias chrpc='git cherry-pick --continue'
alias chk='git checkout'
alias ch-='git checkout -'
EOF
echo "UPDATED"
fi
}
function upd30_git_user {
if _mute git config --global --get user.name; then
_log "user.name already ok"
_log -n ""
read -e -p "+++Enter your git AUTHOR-NAME: " inp
git config --global user.name "inp"
echo "UPDATED"
fi
if _mute git config --global --get user.email; then
_log "user.email already ok"
_log -n ""
read -e -p "+++Enter your git AUTHOR-EMAIL: " inp
git config --global user.email "inp"
_log "UPDATED"
fi
}
function upd20_git_lg {
if _mute git config --global --get alias.lg; then
_log "already ok"
_log -n "updating..."
git config --global credential.helper store
git config --global alias.lg "log --color --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit"
git config --global alias.lgg "log --color --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit --all"
git config --global alias.log 'log'
git config --global alias.status 'status'
git config --global alias.show 'show'
git config --global alias.log 'log'
git config --global alias.rb 'rebase'
git config --global alias.rbi 'rebase -i'
git config --global alias.rba 'rebase --abort'
git config --global alias.rbc 'rebase --continue'
git config --global alias.chrp 'cherry-pick'
git config --global alias.chrpa 'cherry-pick --abort'
git config --global alias.chrpc 'cherry-pick --continue'
git config --global alias.chk 'checkout'
git config --global alias.ch- 'checkout -'
_log "UPDATED"
fi
}
function upd40_bashrc_conda_init {
if _mute grep ">>> conda initialize >>>" ~/.bashrc; then
_log 'already ok; delete ">>> conda initialize >>>" section from `~/.bashrc` to re-run.'
_log -n "updating..."
# Strict-priority for when using conda-forge, to speedup
# eg for `conda-bash-completion` package`,
# see https://conda-forge.org/docs/user/tipsandtricks.html#how-to-fix-it.
conda config --set channel_priority strict
# Suggested by BDAP docs:
# https://jeodpp.jrc.ec.europa.eu/apps/gitlab/for-everyone/documentation/-/wikis/Jeodpp_services/Jeodesk/JEO-Desk-20-user-manual#conda-use-example-creation-of-an-environment-with-python-35-and-numpy-accessible-via-jupyterlab
conda config --set auto_activate_base False
# To reduce bash-prompt width, from:
# https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#id3
conda config --set env_prompt '({name})'
# Stop "conda outdated" message (is `conda env update` faster?).
conda config --set auto_update_conda False
conda init bash # Effective only if never used conda before.
echo "UPDATED"
fi
}
function upd20_ipython_ustore_vars {
if [ -f "$ipython_startup_ustore_vars" ]; then
_log "already ok"
_log -n "updating..."
mkdir -p $(dirname "$ipython_startup_ustore_vars")
cat > "$ipython_startup_ustore_vars" <<- EOF
## BDAP Storage locations
PSTORE="/eos/jeodpp/data/projects/LEGENT"
USTORE="/eos/jeodpp/home/users/${USER}"
UTRANS="/eos/jeodpp/home/users/${USER}/transfer"
PTRANS="/eos/jeodpp/data/projects/LEGENT/transfer"
EOF
echo "UPDATED"
fi
}
## This function must be the 1st to run after all `upd_xxx` actions.
# The last command of this action, activating conda-env,
# will fail if not re-logged in after `conda init bash`.
function upd50_create_conda_env {
if [ -d "$conda_env_prefix" ]; then
_log -e "already ok: $conda_env_prefix
Reminder, how to (re-)activate your environment: conda activate $conda_env_prefix_rel"
_log "should take ~3' to create a conda-env@$conda_env_prefix..."
conda env create -p "$conda_env_prefix" -f environment.yml
## Setup any conda-env variables:
# - PYTHONPATH pointing to project-root, to run scripts from there.
conda env config vars set -p $conda_env_prefix PATH="$PATH:$mydir/"
conda env config vars set -p $conda_env_prefix PYTHONPATH="$PYTHONPATH:$mydir/"
_log "ACTIVATE YOUR ENVIRONMENT with: conda activate $conda_env_prefix_rel"
function _list_all_actions {
declare -F|grep -oE ' [a-zA-Z]\w+$' | sort
}
function all {
for cmd in $(_list_all_actions); do
if [ "$cmd" != "${FUNCNAME[0]}" ]; then
$cmd
fi
done
}
if [[ $# -eq 1 && ( "$1" = "-h" || "$1" = "--help" ) ]]; then
echo -e "$mycmd - actions to setup a BDAP user account.\n"
echo -e "SYNTAX:\n $mycmd\n $mycmd ACTION\nWHERE:\n ACTION is one of:"
_list_all_actions
echo -e '\nWithout any args, it launches `all` actions, in order.'
echo -e '\nNOTES:\n * The `upd30_git_user` action awaits interactively input from the user.'
echo -e ' * You may have to logout & re-login after `upd40_bashrc_conda_init`,
for `upd50_create_conda_env` to succeed.'
echo -e ' * You can repeatedly run this script, until all action succeed.'
elif [[ $# -eq 0 ]]; then
## execute the asked action.